org.biojava.bio.structure.align.ce

Class CeUserArgumentProcessor

java.lang.Object

org.biojava.bio.structure.align.ce.AbstractUserArgumentProcessor

org.biojava.bio.structure.align.ce.CeUserArgumentProcessor

All Implemented Interfaces:

UserArgumentProcessor

public class CeUserArgumentProcessor
extends AbstractUserArgumentProcessor

process the arguments from command line

Author:

Andreas Prlic

Field Summary

Fields inherited from class org.biojava.bio.structure.align.ce.AbstractUserArgumentProcessor

mandatoryArgs, newline, params, PDB_DIR

Constructor Summary

Constructors

Constructor and Description
CeUserArgumentProcessor()

Method Summary

Methods

Modifier and Type	Method and Description
StructureAlignment	getAlgorithm()
String	getDbSearchLegend()
Object	getParameters()

Methods inherited from class org.biojava.bio.structure.align.ce.AbstractUserArgumentProcessor

getDbSearchResult, getMandatoryArgs, process

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CeUserArgumentProcessor

public CeUserArgumentProcessor()

Method Detail

getAlgorithm

public StructureAlignment getAlgorithm()

Specified by:

getAlgorithm in class AbstractUserArgumentProcessor

getParameters

public Object getParameters()

Specified by:

getParameters in class AbstractUserArgumentProcessor

getDbSearchLegend

public String getDbSearchLegend()

Specified by:

getDbSearchLegend in class AbstractUserArgumentProcessor