org.biojava.bio.structure.align.ce

Interface ConfigStrucAligParams

All Known Implementing Classes:

CeParameters, FatCatParameters, OptimalCECPParameters, SmithWaterman3DParameters

public interface ConfigStrucAligParams

Method Summary

Methods

Modifier and Type	Method and Description
List<String>	getUserConfigHelp() The help text for each of these parameters.
List<String>	getUserConfigParameterNames() The labels to be displayed to the user for each parameter
List<String>	getUserConfigParameters() get the list of parameters that the user can change through the user interface.
List<Class>	getUserConfigTypes() Get the data types of the parameters
void	reset() Set the parameters to the default.

Method Detail

getUserConfigParameters

List<String> getUserConfigParameters()

get the list of parameters that the user can change through the user interface. Parameter names are the same names as the corresponding Get/Set methods.

Returns:

list of parameters

getUserConfigParameterNames

List<String> getUserConfigParameterNames()

The labels to be displayed to the user for each parameter

Returns:

list of parameter names

getUserConfigTypes

List<Class> getUserConfigTypes()

Get the data types of the parameters

Returns:

list of parameter classes

getUserConfigHelp

List<String> getUserConfigHelp()

The help text for each of these parameters.

Returns:

help strings

reset

void reset()

Set the parameters to the default.