org.biojava.bio.structure.align.fatcat

Class FatCatUserArgumentProcessor

java.lang.Object

org.biojava.bio.structure.align.ce.AbstractUserArgumentProcessor

org.biojava.bio.structure.align.fatcat.FatCatUserArgumentProcessor

All Implemented Interfaces:

UserArgumentProcessor

public class FatCatUserArgumentProcessor
extends AbstractUserArgumentProcessor

Field Summary

Fields inherited from class org.biojava.bio.structure.align.ce.AbstractUserArgumentProcessor

mandatoryArgs, newline, params, PDB_DIR

Constructor Summary

Constructors

Constructor and Description
FatCatUserArgumentProcessor()

Method Summary

Methods

Modifier and Type	Method and Description
StructureAlignment	getAlgorithm()
String	getDbSearchLegend()
Object	getParameters()

Methods inherited from class org.biojava.bio.structure.align.ce.AbstractUserArgumentProcessor

getDbSearchResult, getMandatoryArgs, process

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FatCatUserArgumentProcessor

public FatCatUserArgumentProcessor()

Method Detail

getAlgorithm

public StructureAlignment getAlgorithm()

Specified by:

getAlgorithm in class AbstractUserArgumentProcessor

getParameters

public Object getParameters()

Specified by:

getParameters in class AbstractUserArgumentProcessor

getDbSearchLegend

public String getDbSearchLegend()

Specified by:

getDbSearchLegend in class AbstractUserArgumentProcessor