| Class | Description |
|---|---|
| AFPCalculator |
a class that performs calculations on AFPCHains
|
| AFPChainer |
a class to chain AFPs to an alignment
|
| AFPOptimizer | |
| AFPPostProcessor |
does post processing after alignment chaingin
|
| FatCatAligner |
A class that does calculations on an AFPChain
|
| FatCatParameters | |
| FCAlignHelper | |
| SigEva | |
| StructureAlignmentOptimizer |
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