org.biojava.bio.structure.align.pairwise

Class FragmentPair

java.lang.Object

org.biojava.bio.structure.align.pairwise.FragmentPair

public class FragmentPair
extends Object

a pair of fragments of two protein structures

Since:

1.5

Version:

%I% %G%

Author:

Andreas Prlic

Constructor Summary

Constructors

Constructor and Description
FragmentPair(int length, int p1, int p2)

Method Summary

Methods

Modifier and Type	Method and Description
Object	clone()
Atom	getCenter1()
Atom	getCenter2()
int	getCluster()
int	getContacts()
int	getCovered()
int	getLength()
int	getPos1()
int	getPos2()
double	getRms()
Matrix	getRot()
Atom	getTrans()
Atom	getUnitv()
int	getUsed()
void	setCenter1(Atom center1)
void	setCenter2(Atom center2)
void	setCluster(int cluster)
void	setContacts(int contacts)
void	setCovered(int covered)
void	setLength(int length)
void	setPos1(int pos1)
void	setPos2(int pos2)
void	setRms(double rms)
void	setRot(Matrix rot)
void	setTrans(Atom trans)
void	setUnitv(Atom unitv)
void	setUsed(int used)
String	toString()

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

FragmentPair

public FragmentPair(int length,
            int p1,
            int p2)

Method Detail

clone

public Object clone()

Overrides:

clone in class Object

getCluster

public int getCluster()

setCluster

public void setCluster(int cluster)

getContacts

public int getContacts()

setContacts

public void setContacts(int contacts)

getCovered

public int getCovered()

setCovered

public void setCovered(int covered)

getLength

public int getLength()

setLength

public void setLength(int length)

getPos1

public int getPos1()

setPos1

public void setPos1(int pos1)

getPos2

public int getPos2()

setPos2

public void setPos2(int pos2)

getRms

public double getRms()

setRms

public void setRms(double rms)

getRot

public Matrix getRot()

setRot

public void setRot(Matrix rot)

getTrans

public Atom getTrans()

setTrans

public void setTrans(Atom trans)

getUnitv

public Atom getUnitv()

setUnitv

public void setUnitv(Atom unitv)

getUsed

public int getUsed()

setUsed

public void setUsed(int used)

getCenter1

public Atom getCenter1()

setCenter1

public void setCenter1(Atom center1)

getCenter2

public Atom getCenter2()

setCenter2

public void setCenter2(Atom center2)

toString

public String toString()

Overrides:

toString in class Object