org.biojava.bio.structure.gui.util

Class AlignedPosition

java.lang.Object

org.biojava.bio.structure.gui.util.AlignedPosition

public class AlignedPosition
extends Object

Field Summary

Fields

Modifier and Type	Field and Description
static int	EQUIVALENT flag if this position is equivalent
static int	NOT_ALIGNED they can be shown in the same column (for a compact display) , but they are not structurally equivalent

Constructor Summary

Constructors

Constructor and Description
AlignedPosition()

Method Summary

Methods

Modifier and Type	Method and Description
int	getEquivalent()
int	getPos(int position)
int	getPos1()
int	getPos2()
void	setEquivalent(int equivalent)
void	setPos(int position, int pos)
void	setPos1(int pos1)
void	setPos2(int pos2)
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

EQUIVALENT

public static final int EQUIVALENT

flag if this position is equivalent

See Also:

Constant Field Values

NOT_ALIGNED

public static final int NOT_ALIGNED

they can be shown in the same column (for a compact display) , but they are not structurally equivalent

See Also:

Constant Field Values

Constructor Detail

AlignedPosition

public AlignedPosition()

Method Detail

getPos

public int getPos(int position)

setPos

public void setPos(int position,
          int pos)

toString

public String toString()

Overrides:

toString in class Object

getPos1

public int getPos1()

setPos1

public void setPos1(int pos1)

getPos2

public int getPos2()

setPos2

public void setPos2(int pos2)

getEquivalent

public int getEquivalent()

setEquivalent

public void setEquivalent(int equivalent)