Package org.biojava.bio.structure.scop

Parsers and API for SCOP, Structural Classification of Proteins.

See: Description

Interface Summary

Interface	Description
ScopDatabase	General API how to interact with SCOP

Class Summary

Class	Description
CachedRemoteScopInstallation	An extension of the RemoteScopInstallation that caches some of the data locally.
RemoteScopInstallation	A class that fetches information about SCOP from a remote data-source.
ScopDescription	Contains data from dir.des.scop.txt_1.75 e.g SunID Cat Class Name Description ----- --- ----- ---- ----------- 26154 px b.47.1.2 d1nrs.1 1nrs L:,H: 125030 px b.47.1.2 d1zgia1 1zgi A:1A-245
ScopDomain	Container for the information for a domain.
ScopFactory	Controls the global ScopDatabase being used.
ScopInstallation	This class provides access to the SCOP protein structure classification.
ScopNode

Enum Summary

Enum	Description
ScopCategory	The various categories provided by SCOP.

Package org.biojava.bio.structure.scop Description

Parsers and API for SCOP, Structural Classification of Proteins. See DemoSCOP.java for an example.