org.biojava3.phylo

Class CheckTreeAccuracy

java.lang.Object

org.biojava3.phylo.CheckTreeAccuracy

public class CheckTreeAccuracy
extends Object

Author:

Scooter

Constructor Summary

Constructors

Constructor and Description
CheckTreeAccuracy()

Method Summary

Methods

Modifier and Type	Method and Description
static org.forester.phylogenyinference.DistanceMatrix	copyMatrix(org.forester.phylogenyinference.DistanceMatrix matrix)
org.forester.phylogeny.PhylogenyNode	findCommonParent(org.forester.phylogeny.PhylogenyNode node)
double	getNodeDistance(org.forester.phylogeny.PhylogenyNode parentNode, org.forester.phylogeny.PhylogenyNode childNode)
void	markPathToRoot(org.forester.phylogeny.PhylogenyNode node, boolean value)
void	process(org.forester.phylogeny.Phylogeny tree, org.forester.phylogenyinference.DistanceMatrix matrix)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CheckTreeAccuracy

public CheckTreeAccuracy()

Method Detail

copyMatrix

public static org.forester.phylogenyinference.DistanceMatrix copyMatrix(org.forester.phylogenyinference.DistanceMatrix matrix)

process

public void process(org.forester.phylogeny.Phylogeny tree,
           org.forester.phylogenyinference.DistanceMatrix matrix)

getNodeDistance

public double getNodeDistance(org.forester.phylogeny.PhylogenyNode parentNode,
                     org.forester.phylogeny.PhylogenyNode childNode)

findCommonParent

public org.forester.phylogeny.PhylogenyNode findCommonParent(org.forester.phylogeny.PhylogenyNode node)

markPathToRoot

public void markPathToRoot(org.forester.phylogeny.PhylogenyNode node,
                  boolean value)