org.biojava.bio.seq.homol
Class SimilarityPairFeature.Template

java.lang.Object
  extended by org.biojava.bio.seq.Feature.Template
      extended by org.biojava.bio.seq.StrandedFeature.Template
          extended by org.biojava.bio.seq.homol.SimilarityPairFeature.Template
All Implemented Interfaces:
Serializable, Cloneable
Enclosing interface:
SimilarityPairFeature

public static class SimilarityPairFeature.Template
extends StrandedFeature.Template

Template for construction of SimilarityPairFeatures.

See Also:
Serialized Form

Field Summary
 Alignment alignment
          alignment Alignment field.
 double score
          score of the search which produced the alignment.
 SimilarityPairFeature sibling
          sibling SimilarityPairFeature field.
 
Fields inherited from class org.biojava.bio.seq.StrandedFeature.Template
strand
 
Fields inherited from class org.biojava.bio.seq.Feature.Template
annotation, location, source, sourceTerm, type, typeTerm
 
Constructor Summary
SimilarityPairFeature.Template()
           
 
Method Summary
 
Methods inherited from class org.biojava.bio.seq.Feature.Template
clone, equals, hashCode, toString
 
Methods inherited from class java.lang.Object
finalize, getClass, notify, notifyAll, wait, wait, wait
 

Field Detail

sibling

public SimilarityPairFeature sibling
sibling SimilarityPairFeature field. May be null if the reciprocal SimilarityPairFeature has not yet been created.


alignment

public Alignment alignment
alignment Alignment field.


score

public double score
score of the search which produced the alignment.

Constructor Detail

SimilarityPairFeature.Template

public SimilarityPairFeature.Template()


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