org.biojava.dasobert.das
Class AlignmentThread

java.lang.Object
  java.lang.Thread
      org.biojava.dasobert.das.AlignmentThread

All Implemented Interfaces:

Runnable

public class AlignmentThread
extends Thread

A thread that gets the alignment from a das server

Author:

Andreas Prlic

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Thread

Thread.State, Thread.UncaughtExceptionHandler

Field Summary

Fields inherited from class java.lang.Thread

MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

AlignmentThread(AlignmentParameters params)

Method Summary

void	addAlignmentListener(AlignmentListener ali)
void	clearAlignmentListeners()
static Annotation	getObject(String objectid, Alignment ali) get the data for an object from the alignment
void	run()

Methods inherited from class java.lang.Thread

activeCount, checkAccess, clone, countStackFrames, currentThread, destroy, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, start, stop, stop, suspend, toString, yield

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

AlignmentThread

public AlignmentThread(AlignmentParameters params)

Method Detail

clearAlignmentListeners

public void clearAlignmentListeners()

addAlignmentListener

public void addAlignmentListener(AlignmentListener ali)

getObject

public static Annotation getObject(String objectid,
                                   Alignment ali)
                            throws NoSuchElementException

get the data for an object from the alignment

Parameters:

objectid - an objectId that is member of this alignment

ali - an Alignment

Returns:

Annotation the description of an Object

Throws:

NoSuchElementException

run

public void run()

Specified by:

run in interface Runnable

Overrides:

run in class Thread