org.biojavax.bio.db.biosql
Class BioSQLFeatureFilter.ByNoteTermOnly

java.lang.Object
  extended by org.biojavax.bio.db.biosql.BioSQLFeatureFilter.HibernateFeatureFilter
      extended by org.biojavax.bio.db.biosql.BioSQLFeatureFilter.ByNoteTermOnly
All Implemented Interfaces:
Serializable, FeatureFilter, BioSQLFeatureFilter
Enclosing interface:
BioSQLFeatureFilter

public static final class BioSQLFeatureFilter.ByNoteTermOnly
extends BioSQLFeatureFilter.HibernateFeatureFilter

A filter that returns all features that have a note with the given term. The value and rank is not checked.

Since:
1.5
Author:
Richard Holland, George Waldon
See Also:
Serialized Form

Nested Class Summary
 
Nested classes/interfaces inherited from interface org.biojavax.bio.db.biosql.BioSQLFeatureFilter
BioSQLFeatureFilter.And, BioSQLFeatureFilter.ByName, BioSQLFeatureFilter.ByNote, BioSQLFeatureFilter.ByNoteTermOnly, BioSQLFeatureFilter.ByRank, BioSQLFeatureFilter.BySequenceName, BioSQLFeatureFilter.BySourceTerm, BioSQLFeatureFilter.BySourceTermName, BioSQLFeatureFilter.ByStrand, BioSQLFeatureFilter.ByTypeTerm, BioSQLFeatureFilter.ByTypeTermName, BioSQLFeatureFilter.ContainedByRichLocation, BioSQLFeatureFilter.HibernateFeatureFilter, BioSQLFeatureFilter.Not, BioSQLFeatureFilter.Or, BioSQLFeatureFilter.OverlapsRichLocation, BioSQLFeatureFilter.Tools
 
Nested classes/interfaces inherited from interface org.biojava.bio.seq.FeatureFilter
FeatureFilter.AnnotationContains, FeatureFilter.ByAncestor, FeatureFilter.ByAnnotation, FeatureFilter.ByAnnotationType, FeatureFilter.ByChild, FeatureFilter.ByClass, FeatureFilter.ByComponentName, FeatureFilter.ByDescendant, FeatureFilter.ByFeature, FeatureFilter.ByPairwiseScore, FeatureFilter.ByParent, FeatureFilter.BySource, FeatureFilter.ByType, FeatureFilter.ContainedByLocation, FeatureFilter.FrameFilter, FeatureFilter.HasAnnotation, FeatureFilter.OnlyChildren, FeatureFilter.OnlyDescendants, FeatureFilter.OverlapsLocation, FeatureFilter.ShadowContainedByLocation, FeatureFilter.ShadowOverlapsLocation, FeatureFilter.StrandFilter
 
Field Summary
 
Fields inherited from class org.biojavax.bio.db.biosql.BioSQLFeatureFilter.HibernateFeatureFilter
and, conjunctAdd, conjunction, disjunctAdd, disjunction, eq, ge, le, not, or
 
Fields inherited from interface org.biojavax.bio.db.biosql.BioSQLFeatureFilter
all, none
 
Fields inherited from interface org.biojava.bio.seq.FeatureFilter
leaf, top_level
 
Constructor Summary
BioSQLFeatureFilter.ByNoteTermOnly(ComparableTerm term)
           
 
Method Summary
 boolean accept(Feature f)
          This method determines whether a feature is to be accepted.
 Object asCriterion()
          This method returns a Hibernate Criterion object that can be used to query the database.
 Map criterionAliasMap()
          Returns a map of property names (keys) to aliases (values), if the criterion returned by asCriterion() uses aliases at all.
 boolean equals(Object o)
           
 ComparableTerm getTerm()
           
 int hashCode()
           
 String toString()
           
 
Methods inherited from class java.lang.Object
clone, finalize, getClass, notify, notifyAll, wait, wait, wait
 

Constructor Detail

BioSQLFeatureFilter.ByNoteTermOnly

public BioSQLFeatureFilter.ByNoteTermOnly(ComparableTerm term)
Method Detail

getTerm

public ComparableTerm getTerm()

accept

public boolean accept(Feature f)
Description copied from interface: FeatureFilter
This method determines whether a feature is to be accepted.

Parameters:
f - the Feature to evaluate
Returns:
true if this feature is to be selected in, or false if it is to be ignored

asCriterion

public Object asCriterion()
Description copied from interface: BioSQLFeatureFilter
This method returns a Hibernate Criterion object that can be used to query the database.

Returns:
a Hibernate Criterion object representing this filter.

criterionAliasMap

public Map criterionAliasMap()
Description copied from interface: BioSQLFeatureFilter
Returns a map of property names (keys) to aliases (values), if the criterion returned by asCriterion() uses aliases at all. If not, then it must at least return the empty map else you'll get NullPointerExceptions thrown elsewhere.

Specified by:
criterionAliasMap in interface BioSQLFeatureFilter
Overrides:
criterionAliasMap in class BioSQLFeatureFilter.HibernateFeatureFilter
Returns:
Map a map of property names to aliases used in the criterion.

equals

public boolean equals(Object o)
Overrides:
equals in class Object

hashCode

public int hashCode()
Overrides:
hashCode in class Object

toString

public String toString()
Overrides:
toString in class Object


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