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| Packages that use org.biojava.bio.structure | |
|---|---|
| org.biojava.bio.program.das.dasstructure | request a protein structure via DAS |
| org.biojava.bio.structure | Interfaces and classes for protein structure (PDB). |
| org.biojava.bio.structure.align | Classes for the super-imposition of structures. |
| org.biojava.bio.structure.align.helper | Helper classes for structural alignment. |
| org.biojava.bio.structure.align.pairwise | Classes for the pairwise alignment of structures. |
| org.biojava.bio.structure.gui | A few convenience classes to view protein structures with Jmol (if it is on the classpath), and to investigate the internals of the protein structure alignment algorithm |
| org.biojava.bio.structure.io | Input and Output of Structures |
| org.biojava.bio.structure.server | classes for easier management of PDB installations |
| Classes in org.biojava.bio.structure used by org.biojava.bio.program.das.dasstructure | |
|---|---|
| Structure
Interface for a structure object. |
|
| Classes in org.biojava.bio.structure used by org.biojava.bio.structure | |
|---|---|
| AminoAcid
A Group that represents an AminoAcid. |
|
| Atom
A simple interface for an Atom. |
|
| Chain
Defines the interface for a Chain. |
|
| Compound
Created by IntelliJ IDEA. |
|
| DBRef
A class to represent database cross references. |
|
| Group
This is the data structure for a single Group of atoms. |
|
| HetatomImpl
Generic Implementation of a Group interface. |
|
| PDBHeader
A class that contains PDB Header information. |
|
| SSBond
A simple bean to store disulfid bridge information, the SSBOND records in the PDB files. |
|
| Structure
Interface for a structure object. |
|
| StructureException
An exception during the parsing of a PDB file. |
|
| Classes in org.biojava.bio.structure used by org.biojava.bio.structure.align | |
|---|---|
| Atom
A simple interface for an Atom. |
|
| Structure
Interface for a structure object. |
|
| StructureException
An exception during the parsing of a PDB file. |
|
| Classes in org.biojava.bio.structure used by org.biojava.bio.structure.align.helper | |
|---|---|
| Atom
A simple interface for an Atom. |
|
| Classes in org.biojava.bio.structure used by org.biojava.bio.structure.align.pairwise | |
|---|---|
| Atom
A simple interface for an Atom. |
|
| Structure
Interface for a structure object. |
|
| StructureException
An exception during the parsing of a PDB file. |
|
| Classes in org.biojava.bio.structure used by org.biojava.bio.structure.gui | |
|---|---|
| Structure
Interface for a structure object. |
|
| Classes in org.biojava.bio.structure used by org.biojava.bio.structure.io | |
|---|---|
| Chain
Defines the interface for a Chain. |
|
| Group
This is the data structure for a single Group of atoms. |
|
| Structure
Interface for a structure object. |
|
| StructureException
An exception during the parsing of a PDB file. |
|
| Classes in org.biojava.bio.structure used by org.biojava.bio.structure.server | |
|---|---|
| PDBHeader
A class that contains PDB Header information. |
|
| Structure
Interface for a structure object. |
|
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