BioJava:Download 3.0.5

This page offers downloads for the BioJava 3.0.5 release.

BioJava 3.0.5 requires Java 1.6 or later.

About

BioJava 3.0.5 has been released and is available using Maven from http://biojava.org/download/maven/

New Features

- New parser for CATH classification
- New parser for Stockholm file format
- Significantly improved representation of biological assemblies of protein structures. Now can re-create biological assembly from asymmetric unit
- Several bug fixes.

View the BioJava:Modules page for a list of current modules.

Maven Download

BioJava 3.0.5 requires Maven for the build process. We are providing a BioJava specific Maven repository at http://biojava.org/download/maven/ .

You can add the BioJava repository by adding the following XML to your project pom.xml file:

        <dependencies>
                ...
                <dependency>
                        <groupId>org.biojava</groupId>
                        <artifactId>biojava3-core</artifactId>
                        <version>3.0.5</version>
                </dependency>
                <!-- other biojava jars as needed -->
        </dependencies>
	<repositories>
		...
		<repository>
			<id>biojava-maven-repo</id>
			<name>BioJava repository</name>
			<url>http://www.biojava.org/download/maven/</url>			
		</repository>
	</repositories>

Manual Download

.tar.gz containing all jars, source and javadocs: biojava-3.0.5-all

Module	Binary Jar	Source Jar	Javadoc Jar
biojava3-core	biojava3-core-3.0.5.jar	biojava3-core-3.0.5-sources.jar	biojava3-core-3.0.5-javadoc.jar
biojava3-alignment	biojava3-alignment-3.0.5.jar	biojava3-alignment-3.0.5-sources.jar	biojava3-alignment-3.0.5-javadoc.jar
biojava3-genome	biojava3-genome-3.0.5.jar	biojava3-genome-3.0.5-sources.jar	biojava3-genome-3.0.5-javadoc.jar
biojava3-structure	biojava3-structure-3.0.5.jar	biojava3-structure-3.0.5-sources.jar	biojava3-structure-3.0.5-javadoc.jar
biojava3-structure-gui	biojava3-structure-gui-3.0.5.jar	biojava3-structure-gui-3.0.5-sources.jar	biojava3-structure-gui-3.0.5-javadoc.jar
biojava3-phylo	biojava3-phylo-3.0.5.jar	biojava3-phylo-3.0.5-sources.jar	biojava3-phylo-3.0.5-javadoc.jar
biojava3-modfinder	biojava3-modfinder-3.0.5.jar	biojava3-modfinder-3.0.5-sources.jar	biojava3-modfinder-3.0.5-javadoc.jar
biojava3-ws	biojava3-ws-3.0.5.jar	biojava3-ws-3.0.5-sources.jar	biojava3-ws-3.0.5-javadoc.jar
biojava3-aa-prop	biojava3-aa-prop-3.0.5.jar	biojava3-aa-prop-3.0.5-sources.jar	biojava3-aa-prop-3.0.5-javadoc.jar
biojava3-protein-disorder	biojava3-protein-disorder-3.0.5.jar	biojava3-protein-disorder-3.0.5-sources.jar	biojava3-protein-disorder-3.0.5-javadoc.jar

Browse API docs

You can also browse the documentation at BioJava 3.0.5 api

Release Date

BioJava 3.0.5 has been released on November 30th 2012

Getting older versions

• The legacy release of 3.0.4 can be found here (requires Java 1.6+)
• The legacy release of 3.0.3 can be found here (requires Java 1.6+)
• The legacy release of 3.0.2 can be found here (requires Java 1.6+)
• The legacy release of 3.0.1 can be found here (requires Java 1.6+)
• The legacy release of 3.0 can be found here (requires Java 1.5+)
• The legacy release of 1.8 can be found here (requires Java 1.5+)
• The legacy release of 1.7.1 can be found here (requires Java 1.5+)
• The legacy release of 1.7 can be found here (requires Java 1.5+)
• The legacy release of 1.6 can be found here (requires Java 1.5+)
• The legacy release of 1.5 can be found here (requires Java 1.4.2+)
• The legacy release of 1.4 can be found here
• The legacy release 1.3 can be found here.
• Older releases of BioJava can be found in the download area.