BioJava:Download 3.0.2

From BioJava

This page offers downloads for the BioJava 3.0.2 release.

BioJava 3.0.2 requires Java 1.6 or later.

Contents 1 About 2 Maven Download 3 Manual Download 4 Browse API docs 5 Release Date 6 Getting older versions

About

BioJava 3.0.2 has been released and is available using Maven from http://biojava.org/download/maven/

BioJava 3.0.2 adds several new modules and enhances the capabilities of BioJava:

- biojava3-aa-prop: This new module allows the calculation of physico chemical and other properties of protein sequences.
- biojava3-protein-disorder: A new module for the prediction of disordered regions in proteins. It based on a Java implementation of the RONN predictor

Other noteworthy improvements:

- protein-structure: Improved handling of protein domains: Now supports SCOP. New functionality for automated prediction of protein domains, based on Protein Domain Parser.
- Minor improvements and bug fixes in several other modules.

View the BioJava:Modules page for a list of current modules.

Maven Download

BioJava 3.0.2 requires Maven for the build process. We are providing a BioJava specific Maven repository at http://biojava.org/download/maven/ .

You can add the BioJava repository by adding the following XML to your project pom.xml file:

        <dependencies>
                ...
                <dependency>
                        <groupId>org.biojava</groupId>
                        <artifactId>biojava3-core</artifactId>
                        <version>3.0.2</version>
                </dependency>
                <!-- other biojava jars as needed -->
        </dependencies>
	<repositories>
		...
		<repository>
			<id>biojava-maven-repo</id>
			<name>BioJava repository</name>
			<url>http://www.biojava.org/download/maven/</url>			
		</repository>
	</repositories>

Manual Download

.tar.gz containing all jars, source and javadocs: biojava-3.0.2-all

Module	Binary Jar	Source Jar	Javadoc Jar
biojava3-core	biojava3-core-3.0.2.jar	biojava3-core-3.0.2-sources.jar	biojava3-core-3.0.2-javadoc.jar
biojava3-alignment	biojava3-alignment-3.0.2.jar	biojava3-alignment-3.0.2-sources.jar	biojava3-alignment-3.0.2-javadoc.jar
biojava3-genome	biojava3-genome-3.0.2.jar	biojava3-genome-3.0.2-sources.jar	biojava3-genome-3.0.2-javadoc.jar
biojava3-structure	biojava3-structure-3.0.2.jar	biojava3-structure-3.0.2-sources.jar	biojava3-structure-3.0.2-javadoc.jar
biojava3-structure-gui	biojava3-structure-gui-3.0.2.jar	biojava3-structure-gui-3.0.2-sources.jar	biojava3-structure-gui-3.0.2-javadoc.jar
biojava3-phylo	biojava3-phylo-3.0.2.jar	biojava3-phylo-3.0.2-sources.jar	biojava3-phylo-3.0.2-javadoc.jar
biojava3-protmod	biojava3-protmod-3.0.2.jar	biojava3-protmod-3.0.2-sources.jar	biojava3-protmod-3.0.2-javadoc.jar
biojava3-ws	biojava3-ws-3.0.2.jar	biojava3-ws-3.0.2-sources.jar	biojava3-ws-3.0.2-javadoc.jar
biojava3-aa-prop	biojava3-aa-prop-3.0.2.jar	biojava3-aa-prop-3.0.2-sources.jar	biojava3-aa-prop-3.0.2-javadoc.jar
biojava3-protein-disorder	biojava3-protein-disorder-3.0.2.jar	biojava3-protein-disorder-3.0.2-sources.jar	biojava3-protein-disorder-3.0.2-javadoc.jar

Browse API docs

You can also browse the documentation at BioJava 3.0.2 api

Release Date

BioJava 3.0.2 has been released on September 2nd, 2011.

Getting older versions

• The legacy release of 3.0.1 can be found here (requires Java 1.6+)
• The legacy release of 3.0 can be found here (requires Java 1.5+)
• The legacy release of 1.8 can be found here (requires Java 1.5+)
• The legacy release of 1.7.1 can be found here (requires Java 1.5+)
• The legacy release of 1.7 can be found here (requires Java 1.5+)
• The legacy release of 1.6 can be found here (requires Java 1.5+)
• The legacy release of 1.5 can be found here (requires Java 1.4.2+)
• The legacy release of 1.4 can be found here
• The legacy release 1.3 can be found here.
• Older releases of BioJava can be found in the download area.