BioJava 3 tutorial:
BioJava legacy tutorials:
The following tutorials are currently available - more are always welcome! While reading these, you will probably also want to refer to the JavaDoc API documentation (latest biojava 1.9.1).
- Sequence basics
- Changeability basics
- Blast-like parsing (NCBI Blast, WU-Blast, HMMER)
- Walkthrough of one of the dynamic programming examples
- Installing BioSQL
- Approaches to Web Development for Bioinformatics
The BioJava Legacy Cookbook offers cookbook-style tutorials about performing many common tasks in BioJava 1.
Additionally, a number of small demo programs can be found in the
demos directory of the BioJava source distribution.