Combinatorial Extension with Circular Permutations
Combinatorial Extension with Circular Permutations (CE-CP) is a structural comparison algorithm provided by BioJava. It provides the ability to compare protein structures related by a circular permutation. In circularly permutated proteins, the N-terminal part of one protein is related to the C-terminal part of the other, and vice versa. For more information on circular permutations, see the Wikipedia or Molecule of the Month articles.
See Also
- BioJava Tutorial on structural alignments, including CE-CP
- The CeCPMain class documentation