Package org.biojava.nbio.alignment
Enum Alignments.PairwiseSequenceScorerType
- java.lang.Object
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- java.lang.Enum<Alignments.PairwiseSequenceScorerType>
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- org.biojava.nbio.alignment.Alignments.PairwiseSequenceScorerType
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- All Implemented Interfaces:
Serializable
,Comparable<Alignments.PairwiseSequenceScorerType>
- Enclosing class:
- Alignments
public static enum Alignments.PairwiseSequenceScorerType extends Enum<Alignments.PairwiseSequenceScorerType>
List of implemented pairwise sequence scoring routines.
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Enum Constant Summary
Enum Constants Enum Constant Description GLOBAL
GLOBAL_IDENTITIES
GLOBAL_SIMILARITIES
KMERS
LOCAL
LOCAL_IDENTITIES
LOCAL_SIMILARITIES
WU_MANBER
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Method Summary
All Methods Static Methods Concrete Methods Modifier and Type Method Description static Alignments.PairwiseSequenceScorerType
valueOf(String name)
Returns the enum constant of this type with the specified name.static Alignments.PairwiseSequenceScorerType[]
values()
Returns an array containing the constants of this enum type, in the order they are declared.
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Enum Constant Detail
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GLOBAL
public static final Alignments.PairwiseSequenceScorerType GLOBAL
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GLOBAL_IDENTITIES
public static final Alignments.PairwiseSequenceScorerType GLOBAL_IDENTITIES
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GLOBAL_SIMILARITIES
public static final Alignments.PairwiseSequenceScorerType GLOBAL_SIMILARITIES
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LOCAL
public static final Alignments.PairwiseSequenceScorerType LOCAL
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LOCAL_IDENTITIES
public static final Alignments.PairwiseSequenceScorerType LOCAL_IDENTITIES
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LOCAL_SIMILARITIES
public static final Alignments.PairwiseSequenceScorerType LOCAL_SIMILARITIES
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KMERS
public static final Alignments.PairwiseSequenceScorerType KMERS
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WU_MANBER
public static final Alignments.PairwiseSequenceScorerType WU_MANBER
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Method Detail
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values
public static Alignments.PairwiseSequenceScorerType[] values()
Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:for (Alignments.PairwiseSequenceScorerType c : Alignments.PairwiseSequenceScorerType.values()) System.out.println(c);
- Returns:
- an array containing the constants of this enum type, in the order they are declared
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valueOf
public static Alignments.PairwiseSequenceScorerType valueOf(String name)
Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)- Parameters:
name
- the name of the enum constant to be returned.- Returns:
- the enum constant with the specified name
- Throws:
IllegalArgumentException
- if this enum type has no constant with the specified nameNullPointerException
- if the argument is null
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