org.biojava.bio.seq.io

Class EmblLikeLocationParser

java.lang.Object

org.biojava.bio.seq.io.EmblLikeLocationParser

Deprecated.

Use org.biojavax.bio.seq.io framework instead

public class EmblLikeLocationParser
extends Object

EmblLikeLocationParser parses EMBL/Genbank style locations. Supported location forms:

   123
  <123 or >123
  (123.567)
  (123.567)..789
   123..(567.789)
  (123.345)..(567.789)
   123..456
  <123..567 or 123..>567 or <123..>567
   123^567
   AL123465:(123..567)
 

Since:

1.2

Author:

Keith James, Greg Cox

Method Summary

Methods

Modifier and Type	Method and Description
Feature.Template	parseLocation(String location, Feature.Template theTemplate) Deprecated. parseLocation creates a Location from the String and returns a stranded location.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

parseLocation

public Feature.Template parseLocation(String location,
                             Feature.Template theTemplate)
                               throws BioException

Deprecated.

parseLocation creates a Location from the String and returns a stranded location.

Parameters:

location - a location String.

theTemplate - the template to be filled with the parsed out location information.

Throws:

BioException - if an error occurs.